Method for displaying 'child-parent' link structure of subsets in ExperimentSubset objects

The function displays the content of an ExperimentSubset object including all available main assays, all subsets and the subset assays inside these subsets. This function also depicts how and in what order the subsets in the object are linked with their parents. Moreover, all supplementary data inside the subsets such as reducedDims and altExps are also displayed against each subset entry.

Usage

subsetSummary(x)

# S4 method for class 'SubsetRangedSummarizedExperiment'
subsetSummary(x)

# S4 method for class 'SubsetSingleCellExperiment'
subsetSummary(x)

# S4 method for class 'SubsetSummarizedExperiment'
subsetSummary(x)

# S4 method for class 'SubsetSpatialExperiment'
subsetSummary(x)

# S4 method for class 'SubsetTreeSummarizedExperiment'
subsetSummary(x)

Arguments

x

ExperimentSubset Input ExperimentSubset object.

Value

Prints all the available subset information against the input ExperimentSubset object.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
assay(es, "subset1",
subsetAssayName = "subset1pAssay") <- assay(es, "subset1")[,] + 1
#> Storing assay inside subset 'subset1'.
subsetSummary(es)
#> Main assay(s):
#>  counts logcounts 
#> 
#> Subset(s):
#>      Name    Dim Parent        Assays
#> 1 subset1 10, 10 counts subset1pAssay