subsetRownames

Get rownames from a subset in the ExperimentSubset object.

Set rownames to a subset in the ExperimentSubset object.

Usage

subsetRownames(x, subsetName)

subsetRownames(x, subsetName) <- value

# S4 method for class 'SubsetRangedSummarizedExperiment'
subsetRownames(x, subsetName)

# S4 method for class 'SubsetRangedSummarizedExperiment'
subsetRownames(x, subsetName) <- value

# S4 method for class 'SubsetSingleCellExperiment'
subsetRownames(x, subsetName)

# S4 method for class 'SubsetSingleCellExperiment'
subsetRownames(x, subsetName) <- value

# S4 method for class 'SubsetSummarizedExperiment'
subsetRownames(x, subsetName)

# S4 method for class 'SubsetSummarizedExperiment'
subsetRownames(x, subsetName) <- value

# S4 method for class 'SubsetSpatialExperiment'
subsetRownames(x, subsetName)

# S4 method for class 'SubsetSpatialExperiment'
subsetRownames(x, subsetName) <- value

# S4 method for class 'SubsetTreeSummarizedExperiment'
subsetRownames(x, subsetName)

# S4 method for class 'SubsetTreeSummarizedExperiment'
subsetRownames(x, subsetName) <- value

Arguments

x

Input ExperimentSubset object.

subsetName

Name of the subset to get rownames from or set them to.

value

Specify the rownames values to replace.

Value

A vector of rownames.

Input object with rownames set to a subset.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
subsetRownames(es, "subset1")
#>  [1] "OPCML"         "RP11-338K17.8" "RP11-770J1.3"  "NPSR1"        
#>  [5] "AC060835.1"    "GABRA2"        "PRDM16"        "CAB39"        
#>  [9] "LYRM1"         "RP1-178F10.3"