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subsetColnames

Source: R/allGenerics.R, R/SubsetRangedSummarizedExperiment.R, R/SubsetSingleCellExperiment.R, and 3 more
subsetColnames.Rd

Get colnames from a subset in the ExperimentSubset object.

Set colnames to a subset in the ExperimentSubset object.

Usage

subsetColnames(x, subsetName)

subsetColnames(x, subsetName) <- value

# S4 method for class 'SubsetRangedSummarizedExperiment'
subsetColnames(x, subsetName)

# S4 method for class 'SubsetRangedSummarizedExperiment'
subsetColnames(x, subsetName) <- value

# S4 method for class 'SubsetSingleCellExperiment'
subsetColnames(x, subsetName)

# S4 method for class 'SubsetSingleCellExperiment'
subsetColnames(x, subsetName) <- value

# S4 method for class 'SubsetSummarizedExperiment'
subsetColnames(x, subsetName)

# S4 method for class 'SubsetSummarizedExperiment'
subsetColnames(x, subsetName) <- value

# S4 method for class 'SubsetSpatialExperiment'
subsetColnames(x, subsetName)

# S4 method for class 'SubsetSpatialExperiment'
subsetColnames(x, subsetName) <- value

# S4 method for class 'SubsetTreeSummarizedExperiment'
subsetColnames(x, subsetName)

# S4 method for class 'SubsetTreeSummarizedExperiment'
subsetColnames(x, subsetName) <- value

Arguments

x

Input ExperimentSubset object.

subsetName

Name of the subset to set colnames to.

value

Specify the colname values to replace.

Value

A vector of colnames.

Input object with colnames set to a subset.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
subsetColnames(es, "subset1")
#>  [1] "TTAGTTCTCGTAGGAG" "GGCTGGTGTCTCGTTC" "TCGCGTTGTTAAGTAG" "GGATGTTGTAGGCATG"
#>  [5] "AATCGGTTCTGATACG" "GTTCTCGGTATGAAAC" "TCCACACTCTTTAGTC" "GCGCAGTAGATGCGAC"
#>  [9] "CGGACACTCAAGAAGT" "TGACTTTGTCGCGAAA"