Accessor method for colData from subsets in ExperimentSubset objects

Get colData from a subset.

Set colData to a subset.

Usage

subsetColData(x, subsetName, parentColData)

subsetColData(x, subsetName) <- value

# S4 method for class 'SubsetRangedSummarizedExperiment'
subsetColData(x, subsetName, parentColData)

# S4 method for class 'SubsetRangedSummarizedExperiment'
subsetColData(x, subsetName) <- value

# S4 method for class 'SubsetSingleCellExperiment'
subsetColData(x, subsetName, parentColData)

# S4 method for class 'SubsetSingleCellExperiment'
subsetColData(x, subsetName) <- value

# S4 method for class 'SubsetSummarizedExperiment'
subsetColData(x, subsetName) <- value

# S4 method for class 'SubsetSummarizedExperiment'
subsetColData(x, subsetName, parentColData)

# S4 method for class 'SubsetSpatialExperiment'
subsetColData(x, subsetName, parentColData)

# S4 method for class 'SubsetSpatialExperiment'
subsetColData(x, subsetName) <- value

# S4 method for class 'SubsetTreeSummarizedExperiment'
subsetColData(x, subsetName, parentColData)

Arguments

x

ExperimentSubset Input ExperimentSubset object.

subsetName

character(1) Name of the subset to set colData to.

parentColData

logical(1) Logical value indicating if parent colData should be combined or not. A subset's own column hides the main object's column of the same name, with a message if their values differ. Default FALSE.

value

Input DataFrame to store; a data.frame is converted to one, and NULL removes the subset's own colData columns. Its rownames must be NULL or the subset's column names, in the same order; other rownames are an error. Use subsetColnames<- to rename columns.

Value

The colData from input object.

Input object with colData stored.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
subsetColData(es, "subset1")
#> DataFrame with 10 rows and 0 columns