reducedDimNames<- — reducedDimNames<- • ExperimentSubset

A wrapper to the reducedDimNames<- from reducedDims method with additional support for subsets.

Usage

reducedDimNames(x, subsetName) <- value

# S4 method for class 'ANY'
reducedDimNames(x, subsetName) <- value

Arguments

x: Input ExperimentSubset object or any object supported by reducedDimNames<- from reducedDims method.
subsetName: Specify the name of the subset to which the reducedDimNames<- should be set to. If missing, reducedDimNames<- from reducedDims method is called on the main object.
value: Input value same as reducedDimNames<- from reducedDims method.

Value

Input object with reducedDimNames<- set.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(1:50), cols = c(1:20),
parentAssay = "counts")
# two small reduced dimensions, one row per cell in the subset
set.seed(1)
pca1 <- matrix(rnorm(40), nrow = 20)
pca2 <- matrix(rnorm(40), nrow = 20)
reducedDims(es, subsetName = "subset1") <- list(PCA_1 = pca1, PCA_2 = pca2)
reducedDimNames(es, subsetName = "subset1") <- c("rDim1", "rDim2")